Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s HindIII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_HindIII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6158160-SRR6158161/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  321,517,882
 Normal Paired: 119,931,205 (37.30%)
 Chimeric Paired: 179,443,046 (55.81%)
 Chimeric Ambiguous: 19,279,016 (6.00%)
 Unmapped: 2,864,615 (0.89%)
 Ligation Motif Present: 94,824,236 (29.49%)
Alignable (Normal+Chimeric Paired): 299,374,251 (93.11%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-21T14:27:07,264]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 277,957,568 (86.45%)
PCR Duplicates: 21,416,683 (6.66%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,991,380,590
Intra-fragment Reads: 55,653,581 (17.31% / 20.02%)
Below MAPQ Threshold: 22,444,657 (6.98% / 8.07%)
Hi-C Contacts: 199,859,330 (62.16% / 71.90%)
 Ligation Motif Present: 72,799,197  (22.64% / 26.19%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 43,199,562  (13.44% / 15.54%)
Intra-chromosomal: 156,659,768  (48.73% / 56.36%)
Short Range (<20Kb): 47,298,550  (14.71% / 17.02%)
Long Range (>20Kb): 109,361,196  (34.01% / 39.34%)